AIgarMIC – Machine-learning assisted agar dilution minimum inhibitory concentration determination

Contents:

• Installation
  • System requirements
  • Environment setup
  • Using pip
  • Install from source
  • Assets installation
• Introduction
  • Functionality
  • User interface
  • Typical workflows
• Quickstart guide
  • Aim
  • Data prerequisites
  • Installation
  • Running AIgarMIC
  • Conclusion
• MIC calculation
• Command-line Interface
  • Rename images
  • AIgarMIC – main command-line interface
  • Manual annotator
  • Clean up annotations
  • Modular model training script
  • Model performance
• Advanced Usage
  • Using custom models
  • Alternative approaches
  • Using custom image splitters
• Technical background
  • Image splitting
  • MIC determination
  • Quality control
• Developer notes
  • Contributing
  • Installation
  • Running tests
  • Test coverage
  • Build process
• About AIgarMIC
  • Author and contact details
  • Contributors and collaborators
• API Reference
  • aigarmic

Indices and tables

• Index

• Module Index

• Search Page